Scaffold Ga0211736_10854108

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10854108
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1891
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → unclassified Acinetobacter → Acinetobacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008081	Metagenome / Metatranscriptome	339	Y
F036704	Metagenome	169	Y
F047062	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_108541082	F036704	N/A	MWLEIDVMLSGSTMDWKELGLDVKHEFVRRMVRLEDIAYVQELVHDIQVMYFYDKTSVLIRGEYQRIRDEILHLENEED
Ga0211736_108541084	F008081	N/A	MEESEILNPFGYGNASRVIDENRKPADWWVEFLDINLEVVENEFYILFSNGSLVKKGRSKFRSSQYLIGDKFKSFRQSYERL
Ga0211736_108541085	F047062	N/A	MNYDSENYFDQEITFTYEGQDFVWTGDYSISSFGEDESEYAPSYGEIEITIDHTYSLYSYEDDCDIIPTPSLLMAVELQIERNL