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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020151 Open in IMG/M |
| Scaffold ID | Ga0211736_10819559 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | SciLifeLab |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3416 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (45.45%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erken, Sweden | |||||||
| Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 4 to 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004583 | Metagenome / Metatranscriptome | 432 | Y |
| F006220 | Metagenome | 378 | Y |
| F007310 | Metagenome | 353 | Y |
| F013084 | Metagenome | 274 | Y |
| F015209 | Metagenome | 256 | N |
| F015472 | Metagenome | 254 | Y |
| F076096 | Metagenome | 118 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211736_108195591 | F015472 | N/A | TRWYSAGKIQVTGEVNGKSYDRMRQPMFWEQLGNFAVCYVRVGRTVFCGFTNDNDGTIQLKLEKCRVVR |
| Ga0211736_1081955910 | F007310 | N/A | MRTVLWNNSERWFNHHHYECLIEDITGFDLQKDLCAESVKYMAKRLKDTPYHRAFRNKYSIYQDEYKMLVEKFNSQADNNGRLVVE |
| Ga0211736_1081955911 | F013084 | N/A | MGILSILGLMEETKNAVLHRGHNVKNWQVLGNDCYALECIDCKKTAMIKGYPLPNEIKVVGEAVAVNCVKPVKEKKLRKK |
| Ga0211736_108195592 | F015209 | AGG | MSNYRQKALSLWSALLAEERWHKFESQACKPSCKGWNGWAPSCECGENYCTFITKGDIEDLELVIIFKPLNF |
| Ga0211736_108195595 | F004583 | AGGAG | MKSTRNSDRLREILFSTRHQIVSLKDIQMDMLRIDAKVANQIATQISALEEVYKHQLSLVNQADNVEPKRNGWFSGHIKTKEDRLANIMD |
| Ga0211736_108195596 | F076096 | AGG | MVCYNTEWENPLYWFDKLLTYTEHAELRTIERDLPFVDFLPLESKFLYRTLKRDVYSMTFETVVNHKRMEIAINSLGFVMTVYPVLITKADKFQYKYKQYLGAFKQPDDYCPPVISDFNFLEGTA |
| Ga0211736_108195598 | F006220 | N/A | MKKFKKFVEELALASGTEMMRASQMRPTSFKDKSKYSRKQKHKNRQDKNSGDSYLQSL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |