NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211736_10812243

Scaffold Ga0211736_10812243


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10812243 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6304
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011488Metagenome / Metatranscriptome290Y
F033041Metagenome / Metatranscriptome178Y
F058996Metagenome / Metatranscriptome134Y
F082677Metagenome / Metatranscriptome113Y
F091630Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_1081224310F058996N/AMKKTNVITPMWKNCLSVLQTGDLELADNKLMELVWKLADYSMLGYKDADKVEGVKLEVWKERVWYAIENAGLLPE
Ga0211736_1081224312F033041N/AMEKIKINSNFKFTFDTDVDLRRAELTGYIESYNMVRICVKRLDNGNQVDFPIKTREDYFETVARLNERANEFDMVEIYQDTHMFDMYDYI
Ga0211736_1081224313F082677N/AMMKQEDKFNGLSKGQVKQIIRRNMITRVGKNKKVYDRKREKRGLAFGD
Ga0211736_1081224319F091630N/AMKIDGNIIEFFDSMPDELLTKLAIYDRGALERICVALTLDIQLLKEETEREKTGLAS
Ga0211736_108122437F011488N/AMTNDELIEELYHKAYAKGFFHELHDKVKELKQNKNIRCGHELVRTAYDELKKIKLAQPSPKN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.