Scaffold Ga0211736_10789247

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10789247
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4080
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035291	Metagenome / Metatranscriptome	172	Y
F100420	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_107892472	F035291	N/A	VQTITRLKVSPALQSRIDRLVGCSGHWILIRDGQPEADCSYQWHQGPEDHLAACLADRWQTLSLGFVPGYCGYSDYSNTGLAGLSNYRTLTDAQSTPDPYSGVLEVGYGWNGRGVVLDLRYVPEDVLETIEALEAYPLISENDHSELEWEGVNKLWAESVADRVRTLQDLGECIFAARRDSAPWEIDRLRDSLVESLNEYPTYAL
Ga0211736_107892476	F100420	N/A	MEPSFNKFSKVVTKYVLGSQERFNELKERMEMCEHATSKAGAAALGYLIAMEEKENRNIYDLVREQVENDGEDSRCRTDAIFTAIYKWLDKKFEDESYHEGSGVRNVLLEAFDIYMVS