Scaffold Ga0211736_10774115

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10774115
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4137
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005701	Metagenome / Metatranscriptome	392	Y
F010749	Metagenome / Metatranscriptome	299	Y
F096603	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1077411511	F010749	GAG	MKRFTFWRNAIISEVYVVECETEEQARTMLMNGEVDVFTEEWVDWATRDFELEHEEIIDPLYRMVKDYQSVDSLVD
Ga0211736_107741152	F005701	AGGA	MFTQCIAYAKLVYNKKINAYKVQIAFNVHKELVGTNYKYKFPVQAKCNYVSGDLLAEDLQNEVQRTVAFAQQNLRTTQIVFVD
Ga0211736_107741157	F096603	GGAG	MSLIDFLLGMALGGFIGFKVAEYIHVTMFRDILVKLKVKDSDMRGMIQDLQKDLTEDAMPRVEVKVELVNDQLYVYRLDTMEFLCQGANREAVLACLGERFHKGYHIVLSEEHGGKYLKESPTS