NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10763281

Scaffold Ga0211736_10763281


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10763281 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2807
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Filimonas → unclassified Filimonas → Filimonas sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051132Metagenome144N
F092067Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0211736_107632814F051132N/AMDNNKINEIQDLLEDEEFKVDNFEFKLWNIRSSWADSLFFDFKVHNPNDESFCRQCLENSLYEELKPYLKYLGIEEKVMVNIFDKNEKLESFYITDDFINGLFDEIKKITDINHDDEYDDLVIKIKQEPTKITLEEHTTGNALTITIYAKYIDHYITRDGNFVNLGPLNKGSIWSVFKEYNNFGEEWYNDVITNYAEKFRPMQCVGFFIETIFI
Ga0211736_107632815F092067N/AMEITRVGYQKALNSYLPRKYPFVERVDITKGPGIKMGMFICNLNVTTKEGFYKRIKGECKERFKEGDVISFWPFIQCFGKNYDIIGFEKDIQIIYTELTGLKSIARDITIKFELR

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