Scaffold Ga0211736_10760023

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10760023
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4949
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F002060	Metagenome / Metatranscriptome	597	Y
F003582	Metagenome / Metatranscriptome	478	Y
F028150	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1076002311	F003582	N/A	MNIYKVKLEVDVEIEAFNEDDALDYSSDIFGVDDEIKNVKVISVKEK
Ga0211736_1076002315	F028150	AGG	MKSLKKWGLAVLNENFTFLGFFVAWVVLEGSAKTVVGYVTIASVALWFLTIGIRERSEKE
Ga0211736_107600234	F002060	AGG	MNHNSLIIAICAAILSGMGTAIIAGIRDSVKEKRRQVERDQDHLRLEVKDLKIELYKIDRELTEWKDKYYNAIQELILVKAELENTLSQLDHIEHHSESLDTEFLI
Ga0211736_107600237	F000473	AGG	MFIDKSAEKQAEHFKYGINHWNGEPMKPVFYTKEMAQKVREIKKPVPDLLMDIVLYPDFLTIRLYEDNFIMYDGIKKEMVIDYVSKVKKLLESYGVRCELEGQPSRGIL