Scaffold Ga0211736_10723934

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10723934
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1350
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052598	Metagenome	142	N
F054041	Metagenome / Metatranscriptome	140	Y
F074411	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_107239342	F074411	GGAG	MFKGNQMQTSIKLTEKQVALLLQILDEQISVGNIDPSDKDLADEVLEILETAENNITFLY
Ga0211736_107239343	F054041	GAGG	MTVIFTCGHKAKDDEDGWTISTKAYTRENNRAVDYRTVCNNCYQVYDNEDLILYGEADVAKWLDGE
Ga0211736_107239344	F052598	N/A	FNCDFVFVTENKEDLLDRVALWLAQLDNTPIYSLNIEVNP