Scaffold Ga0211736_10716978

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10716978
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2496
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013759	Metagenome / Metatranscriptome	268	Y
F017485	Metagenome	240	Y
F017826	Metagenome / Metatranscriptome	238	Y
F062456	Metagenome	130	Y
F074879	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_107169783	F074879	GAG	MNVSINDIKEIETELSITLTDLQRNTILNEYNTIIGDRAEGWDELIKHLIIKQSTIQMLRELNK
Ga0211736_107169784	F017485	N/A	MNNKITKKDMVEGIGFILWVVTILTLVCVLYEVKELKELTKDATNFRSITMRK
Ga0211736_107169785	F062456	N/A	MSSIIESLSHIDTEDRIVAKDFLEEMNWYGIQMGGEYDLDLEVNQWKRGCDVEMINYDMNYWKHCKHFRIPVRKQKYWSKLPTYTDKNGREWTNQYKDWYVDYIQFLKGLDEILWYDWKLIKEYKDNIHFDNHLHKVKGWTTIRSTFITIPLEVGLKRIKHYKKMQDGKWCIVNH
Ga0211736_107169786	F013759	N/A	MKLEFGLSVFSRSETLLGFEITTHNGVHVEDGNLYDQRVVEFSIGIIFAIFTIGFVSKGELLDRVSNKHADQMMKAIEQFEKDVNNFEK
Ga0211736_107169787	F017826	N/A	MDKLKRIWNLVCVPTAFFLGALNMWIGETSVGCLFILFATNETINNDKQ