Scaffold Ga0211736_10685614

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10685614
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 87931
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (75.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004789	Metagenome / Metatranscriptome	423	Y
F007312	Metagenome / Metatranscriptome	353	Y
F012571	Metagenome	279	Y
F095373	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1068561442	F007312	AGGAG	MATFYVGPRPVLKGQNTSQMVNPYTSMSGKAKGTGTYSYYPLYSTSHVLDGAPDNHFAPGTGQFPGNRFLSQVFNGTTLYVHPLSGTFPDGSATYDGARFRPMEYKGLAGAAAFPSGFGHADRVSDYSYNNNIFDGVPSANIFANTGHAARTEAQGAPSSFGVFKPEEFQGVTSSKIFTVGYGQANTTGDYGREKVQEYFGVPSAKAL
Ga0211736_1068561449	F095373	AGG	LAASKVNYIVIYDGHSQVYGCSSKKIALESAPPEGCSIKDKKVLFITFEPDNSNLSAYKVPDEEVFCADIKEKKEKKTDND
Ga0211736_1068561469	F012571	AGGAG	MIENDEDVIGTCSECHSDQPEQYMYRSPFAQEGKNVPCKFCGGVVIITYRETRNQALGQSDSSRGIS
Ga0211736_1068561471	F004789	AGGA	MISQVVINPSNRSCWTFCSCCNRCQDKGRYSKCSDCSGRYDPKLKVLPDPDDFCDCKNGVLRWRTKEGRLILTKFKSNPFKAEVKYVKKTEDERDWDSYVGDMREKLDDPSWNPIAIIDE