Scaffold Ga0211736_10636224

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10636224
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2943
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F001043	Metagenome / Metatranscriptome	794	Y
F020171	Metagenome / Metatranscriptome	225	Y
F071228	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_106362243	F071228	AGGA	METPYGATVTPAVPHEYNSNLLVTYKKIAGTYAAPEAPEYITQKVVDLEWALEQGRRADDLYNGLKLKVNELEELLVELYNPNYTKEEALQQIAELFGFELSKTVTVTGTINFEVTVQVPLDEIDNFDAHYKLGDELSLTSYGSEVEVNDWSIEDTNVDWD
Ga0211736_106362245	F001043	AGGAG	MSDYRDGFQDGYKFAREEIIDKLREIDISDIDGFLLDKLSDMIEGNKI
Ga0211736_106362247	F000450	AGGCGG	MGDRTNFGFVQPNGNTIVLYGHWAGHNMLGKLADAVIKARPRWNDSSYATRIAISQLVKDEWNSETGWGLYVNEIGDNEHKIAVIDWKQQTFSLHKEAPHNDLDNKVNGMSNDAIFTMDLSAFCEKYAMENILVV
Ga0211736_106362248	F020171	AGG	MAEKLKFNQTKKSEQFIDTVAEHITGAMIQEIGEDLFDNWANACLDEGEDYAEREFMAYGSPELKKQYNEFYGYTEKDE