NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10627784

Scaffold Ga0211736_10627784


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10627784 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1025
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009458Metagenome317Y
F019437Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_106277841F019437AGGMSVLDSVIHRKLSEAKELIYARLNELVTERLSEAKRYVAADMFEEIVLDEASSNIVKMGRIQKIRRRIRRNKKGRIIVQRNVRRSGIKGYRISGNSV
Ga0211736_106277842F009458AGAAGMKSLLDFKSIVEEERSDYSKFDILVRAGLANKAQMQRIHKILDKMGEERPNFNNADKAIIQNLFNKMVDLISNNKQINQQARRAIKEEVIELDEVVDTPKDPPNTLVLRRKSIRMFPDNTRIALYYNNTLDKYFSIPYGPKIDSPVQAEEVQIQEAVIDTLHKIVKSKQHEPVQFADGTKMKVDHYTASAITKVHGALNDGNKKKYADMVHKSKDHFKRASDFAFRHVK
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