Scaffold Ga0211736

Basic Information
Taxon OID	3300020151 Open in IMG/M
Scaffold ID	Ga0211736_10605649 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020151 Open in IMG/M

Scaffold ID

Ga0211736_10605649 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17593
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (77.14%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

17593

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (77.14%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	4 to 10
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

4 to 10

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005703	Metagenome / Metatranscriptome	392	Y
F006419	Metagenome / Metatranscriptome	373	Y
F009952	Metagenome / Metatranscriptome	310	Y
F015860	Metagenome	251	Y
F018705	Metagenome / Metatranscriptome	233	Y
F036215	Metagenome	170	Y
F095419	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1060564911	F005703	N/A	VVVAPPDKSLGEDMIGWIAACLLAGLMLPLLAMLYLDVLETKNEAKQSIEKVEKLRRQVEQQRKGNKDD
Ga0211736_1060564920	F009952	N/A	MKVGQILRDAQLDLFEQRDADFLARCRVVAAEVCRQHGSVSINDVRERVQIPAHLHPSVLGAVFRTKQFRKVGLVEANHPQAHARVVRVYSLKNQGERDVS
Ga0211736_1060564923	F018705	N/A	MKPKLKPFLMRLHPATRELLDKAAVDQGRSVSSLIDQCVREQLAPRYGELQPRLQRFLSGVRQP
Ga0211736_1060564927	F015860	GGAG	MMHVSYVKLFRDDEGTVRDTQEANGEIRNFQHQIELLKQALEREMNTVADLRELLDSVRRIAFELNEEILKDTNAQTTK
Ga0211736_1060564929	F036215	AGAAG	VSSVDELACPACGKVHPDAKLITLPDGTVVGGYSNEYRAYTEAKWVLDKLPVTVNRRRKSTPQISRRDYILGVQERRGQESANELALMVTKLWKAAK
Ga0211736_1060564932	F095419	AGGA	MTNDNEIKPSEGKAWKNAEKTEAWHGDYKGTFVMPDGTKHFLDIYVNKKPDGGVWFKIKVGKAKMSSAGSVAAAAPVFAAPQPSPKPAVPDNDDDIPF
Ga0211736_106056496	F006419	GGAG	MNKYAIIHNGSVVNIIEYEDQPSTPPAGFEDGHVAIQTNVASIGWTYANGTFTNPKPPEVVEMPVSKSLTDMILESPAELAKLKQALGI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211736_10605649

Overview

Ecosystem & Geography

Associated Families

Sequences