Scaffold Ga0211736_10575338

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10575338
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5498
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006844	Metagenome / Metatranscriptome	363	Y
F007112	Metagenome	357	Y
F011077	Metagenome / Metatranscriptome	295	Y
F034573	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1057533814	F011077	AGGA	MHELIDTNLTWDDGDIWKGWTYSLEKNRYYFDDIGNESLGALWNSEFLMQAY
Ga0211736_105753383	F007112	AGGAG	MHTLHYIAVEANNKQEAFDKVVVSLQPNEDGHRISDWSDWHVVGGGRWSTNAQKSKDFMDGYRDDSTDVIGYAEDKEKFQEVVKDILRFRSQSMNRNIVEIKTDKFISQMVDYASEGGRGPWNGDTLMNVYSIKQAAEMLMGSWTSDSGFYDLQEHVSEFEYLNERLDKPEQSALQYLVPVDFHF
Ga0211736_105753385	F006844	AGGGGG	MATWDVEIIFEPTGTYMNFEYETDTEDENDIFNEITNQISIIPERTDA
Ga0211736_105753387	F034573	AGGAG	MYRISRANRTTNEEKVAIAIGKHLSDFYLDLEKVGYYLAKATPYLIYRRALEVLDSAKFQEDTIEHTKLQYDQRRLP