Scaffold Ga0211736_10529707

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10529707
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2005
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001008	Metagenome / Metatranscriptome	807	Y
F011754	Metagenome / Metatranscriptome	287	Y
F042301	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_105297072	F042301	AGGAG	MVKAGSKWVGNGDEKFHVIHVIELEGHTWIHYIKENAPEDSNREYSCYEESFLSRFRETPSD
Ga0211736_105297073	F011754	GGA	MKIGFSLGRCVRDIVKGSVDINDVAFIIAATSIHDEPQLANVIEQYMYRDDDYLYGLDADRCQAVALELWSTNKILQPRRQGLHRHRQPENSVWVDMFPTELSDKHSVKSAWDAYRFMLHMTENVDNEAVEVFKQ
Ga0211736_105297074	F001008	GGA	MSREMHKKYQWIDGETADRITSLNLKDYRAYLKKELAQWKKNPKTEDNPDGYWLHPEDVSGNIRRIEALNLIINDFVETSDDIK