Scaffold Ga0211736_10527379

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10527379
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1372
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028744	Metagenome	190	Y
F031377	Metagenome	182	Y
F039000	Metagenome	164	Y
F045551	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_105273791	F045551	GAGG	MTEQRELELLRPYVAACGEMVSKNLELEKHLKAIDRLLLEVIMGDTDHMQAMIIRQKIKDAFHEQS
Ga0211736_105273793	F028744	GAGG	MQNLHEFLYECDELGLALKCFFEYEPAEVGAIEYESGLKLEPDYPEVWTLISVFLPNSSVDLSGVLHPDVIFRIEQDAPVYFEGMRGGDSYD
Ga0211736_105273794	F031377	GGTGG	MITNADDYVVVHRTDKRLTPFNTGKVQIGLLYQPSPPEMTRSEEIIQAALLGVPSKYRPAPVWPVILGSAIVAVLLMFLTR
Ga0211736_105273795	F039000	AGGA	MTKNTDATDKDIEQVMDDAQTLLNICGNTFARPADAWFACLVASAILTAELSIPLEKFLEGFEHAYTDAMKAKYNDAMKGGSYDH