Scaffold Ga0211736_10496868

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10496868
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6799
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (30.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003331	Metagenome / Metatranscriptome	493	Y
F012436	Metagenome / Metatranscriptome	280	Y
F100423	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1049686817	F003331	GAG	MALSEKAQIYYNVWCCAYRRRHNAKLKQDWGLYDREHSTLLMCLKMKDAKWVKFDSDRTYPT
Ga0211736_104968687	F012436	N/A	MSKFKYPNDPPDVKCPYCGESGRPCSNVDSMARAYARGACKKKNEN
Ga0211736_104968689	F100423	N/A	MTLPQQEHNSLLATREFLKLLLDEVKYPDLSEKIRLSAKTLLDHYPERSKIDQLYSGNTFSDIVISDESDITEEERENNNKILNDNQTWETPGYKWRTEVEFVSSSGN