Scaffold Ga0211736_10414983

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10414983
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1720
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006220	Metagenome	378	Y
F010398	Metagenome	304	Y
F013084	Metagenome	274	Y
F070110	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_104149831	F010398	N/A	ELTVDEDAFNDACGDAGLDPANYKSFTKYEWTELNSHIVQVVFDNEQELDYTEIHSQKSIMVDTVTIDDPKQMTTVYYNQDRITDSIEIM
Ga0211736_104149832	F070110	N/A	MFLDDFPIVIWFVRKSRNSYCLYDSCNQLVMRRDEKRKKEIYQYCQDNGIEVQDEF
Ga0211736_104149833	F013084	N/A	MGIMNVLGMMQEAREAATFRGHEVKNWNVLGNDCYLLVCKDCKMEVMVKEYPLPNEIQLAGEAIALDCVKPEKKKLSKKT
Ga0211736_104149835	F006220	AGGA	MKKFKRFVEELAIASGTEMMRASQMRPTSFKDKSKYSRKVKHKKGSENE