Scaffold Ga0211736_10409189

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10409189
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8601
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (67.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009071	Metagenome / Metatranscriptome	323	Y
F020144	Metagenome / Metatranscriptome	225	Y
F044304	Metagenome / Metatranscriptome	154	Y
F047662	Metagenome / Metatranscriptome	149	Y
F099268	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1040918921	F099268	AGG	MKLIDRYNEYYNDEYSASPWGSLTSMEHLQATTIRAVLYAFARKYNMKESISVEDLNNLADLIEEQGNESNKRHETVMKAAQEHSTDAP
Ga0211736_1040918922	F047662	AGGA	MDYETYIDIKQYSVDEYFYYKLRVTDVINMDYYYEGNAKTLDDVMDRIKEHLKNHQN
Ga0211736_1040918923	F044304	N/A	MTTLNLTKRQIIILNLALTTLYDEIAKSGEGVKMRDEIMEFSRYIQKQTQEEN
Ga0211736_1040918924	F020144	GAGG	MSNFYTKLPGCDVVRSKIDVFTMPDPDDEKRFHRVELTVDNDGVFITSCDRAAREDMSISQKDLAIALAKAILEAYD
Ga0211736_1040918926	F009071	GGA	MPFFPDCYDEWGLYKITYDGDHKMYDMLFEGTEEQCRQYAYENYTDKEQTNMCLMDWEAREWDV