Scaffold Ga0211736_10350885

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10350885
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10465
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006110	Metagenome	381	Y
F017452	Metagenome	240	Y
F090062	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1035088510	F090062	AGGAG	MMTTEQLRRKARVMYNNDMVPDYINRHNQRKWVRAVLRLGDRWLIAKPIGRLHAEQSGS
Ga0211736_103508853	F006110	AGGA	MPRPKPPEPLKARYVRLSDKQWIIFNHFGGAEWLRNSLDKKDPFPKTYYKNIFKKEDKPT
Ga0211736_103508854	F017452	AGGAG	MIHTAEDDEFARIEHENAMKGQPYYYDVYVSPSQRNKVLEEVAKEFDKMTAFGDTAASFAIYVRGMKQQCQDQNPPSL