Scaffold Ga0211736_10333359

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10333359
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3997
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001968	Metagenome / Metatranscriptome	610	Y
F042896	Metagenome / Metatranscriptome	157	Y
F050990	Metagenome / Metatranscriptome	144	Y
F068809	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1033335910	F050990	GAG	MTFTGDAVTFLGLIGVISTAIIVITVFRSYYNSPLRK
Ga0211736_1033335911	F001968	GAG	MFDELWSEIADSQGEIFDLDIPELKDEKFDLNAYINGDYDY
Ga0211736_103333597	F068809	N/A	MNFLTPDDLNNLIRLVEDNNQYNDEDDKEFWDDVLIRLNQTSRHCLDV
Ga0211736_103333599	F042896	GAG	MTQTVYVRFSYEDKVSEEVPINLGVNVDLTKNSNRKKLLNGLLKSNPNITEVSFIK