Scaffold Ga0211736_10264300

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10264300
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9748
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F004583	Metagenome / Metatranscriptome	432	Y
F011390	Metagenome	291	Y
F059958	Metagenome	133	N
F070110	Metagenome	123	N
F095470	Metagenome	105	N
F103253	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1026430010	F004583	AGGAG	MKTTRNADRLREILFATRHQIVSLKDIQMDMLRHDAKVANNIATQISALEEVYKHQLTLVNQAESAEPKRNGWFSGHIKTKEDRLANIMD
Ga0211736_1026430014	F095470	GGA	MKKVIWVANESENWHLYRHFEPIIEDVTGFNFKEDLCSETIKYMAKRFSETPYQRRFRSIFSIYQDDYKALVEKFNKQAENNAKIEVK
Ga0211736_1026430018	F001561	GGAG	MQTREQKLVHLKKTIETLWHGVSDTKEGDYPRIISLYKEVLMHDYHDADSWENMVWLMWSMAINKKDTVWLFQAEKFAKRYLSLNPNGYRAYEYVGQFYRIMMVDEKLAIRYYESALRWKDAPETTFHSLTSLYVKNGDKVRAIGNCRFNLRRFPNDPYAKSKLKELTK
Ga0211736_1026430019	F103253	N/A	MEEKVWIYLSKTGTGFQLAGSDIISGFDAFVNADGSYLIEHSYSDIKGDEHFFIYEWDKSQKKRRTIFEGYQRQNVLMGLAKNVDMPESTKQAILKNYTFDEEDLELEKNANS
Ga0211736_102643002	F059958	GAGG	MATKKNENMTTLDAINKLVTFNQLYNSIVSKTVEVKNNLSEAEWALEDAKNEILRSVSDIKELGSNAEQREAKMSAMLDNKVKTVRTITLEYELAKAEEQKSRANLEFAKHLIRATEALAEA
Ga0211736_102643007	F070110	AGGAGG	LFLDDYPIVIWFIRKKKDKYYLFDSIGEFVMMRNENRKQELYQYCESNGIDVQEEF
Ga0211736_102643008	F011390	AGGA	MKIQTTNYGLCTVMKHKYQTNGNLGLSLIDEDGCPVTYITTNIFPMAENEFCANIFNIGATLWNDITSSGLFEQTGEKVPSGYCEYPVCKLVKEVD