Scaffold Ga0211736_10263141

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10263141
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5996
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (95.24%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000808	Metagenome / Metatranscriptome	882	Y
F002515	Metagenome / Metatranscriptome	552	Y
F011487	Metagenome / Metatranscriptome	290	Y
F039631	Metagenome / Metatranscriptome	163	Y
F048982	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1026314115	F039631	AGGTGG	MTTLDKNFIKSSEYGHLTLNQRIALGAHKVANGETLNFRGASVTTYAKVMRLANRIKQEREFPQCPCGYCD
Ga0211736_1026314119	F048982	AGGA	MISIELQDVLATTRKIRNNDRDSGTHYLLGYLWANTPDKEKERIAKLFAKDLEMENNK
Ga0211736_102631412	F011487	AGGAG	MGNIADEFYDEYYATTCPECRENAVDEYEEKCTHCLLEELSSNYNEDIALEMSLGLDY
Ga0211736_102631413	F002515	N/A	MKKNAEELRRLMELRRSNAASAVPNKKKYNRKKCQSELIQLKYQQKGE
Ga0211736_102631417	F000808	AGGAG	MEYNYSLTVSYDGELVSTLRSADMIEVVDAWHKCVDFGDAKEYATYNITDPWGKMVTKTFYRDGRVTGK
Ga0211736_102631418	F000447	GAG	MGYIEIFRLDETGAGWVNLDNATPDELFNLEVGLLNEGALFTTKEND