Scaffold Ga0211736_10257749

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10257749
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2159
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003291	Metagenome / Metatranscriptome	495	Y
F003542	Metagenome / Metatranscriptome	480	Y
F007113	Metagenome / Metatranscriptome	357	Y
F024306	Metagenome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_102577492	F003542	N/A	MSKVNFDYDLFSEKIGYDSVNKQYLIRVYEYLVDSIENYDKPTWSGTMRRMLGSNPKGVNPSSYYSSVRRCLKEIDVCKFDSVKRCMVKGRNWDRFVSAEDWSWFIMRTGSCEYSTIIK
Ga0211736_102577494	F007113	N/A	MKIKLNLTPEELKTVEIALCELFNSDTWTSGRNEADIDKIADRAQYLLHVIESYNKNNKK
Ga0211736_102577495	F003291	N/A	MSTNEMNEKLVSVFTQDELAALMTAMAGYVNVKRKQGRSTGIECVVFNKVTDALLLSNYLNAEEIDVKPNSNAPMGSAAYKAYEAMYDSDVRAHS
Ga0211736_102577496	F024306	N/A	EYPVVMGEYPKKYHSEIKRELAAAGFSTVSNFLIK