Scaffold Ga0211736_10256548

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10256548
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2975
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002268	Metagenome / Metatranscriptome	576	Y
F014135	Metagenome / Metatranscriptome	265	Y
F022413	Metagenome / Metatranscriptome	214	N
F030431	Metagenome / Metatranscriptome	185	N
F085161	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_102565481	F014135	GGAG	MSSGLMLDYDIADKITLLTLKDQLKYLRKELKDFKDGKWLHPEDVANNIKIIAALELLIPYYGGTV
Ga0211736_1025654810	F030431	GAGG	MSDIEIEINELLDTTVMLCEEVAAQVGCPVELVEKIVEKRWNDTLFSDADFMNGYDMAKENA
Ga0211736_1025654812	F085161	GAG	MEVYIVKSYGPENGWVNLKAFDNNDAAVYFANTVEKQIPDDSEDEFVEIEVLNVRSWN
Ga0211736_102565484	F002268	GGAG	MANSSTGITGFIEIFEGRLNKMKLHLKEELTKAKDDRDRKAIRRIISDARKLNKTLKEMRSVNTKLCPHCGEKL
Ga0211736_102565486	F022413	AGGA	MLLAKPKLTNTLDAKQFETFTECQEYLESYTDIAMPLVEWIALGKILVAETMTTPEFYPKKVKGEIVMTKFDIEEFA