Scaffold Ga0211736_10206267

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10206267
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13634
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (12.50%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002303	Metagenome / Metatranscriptome	573	Y
F005630	Metagenome / Metatranscriptome	394	N
F007751	Metagenome / Metatranscriptome	345	Y
F010084	Metagenome	308	Y
F010836	Metagenome / Metatranscriptome	298	Y
F018718	Metagenome / Metatranscriptome	233	Y
F027843	Metagenome	193	Y
F030760	Metagenome / Metatranscriptome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1020626712	F027843	N/A	MQIKFMNANGSMWVVKKEFKADSWFVQGLFSQKFTAQEACEWYCVEKLLRDSNNTHYLVNEVSEAQIIEDEVQS
Ga0211736_1020626717	F002303	N/A	MDIREQCRERAIEFAKEWGYENVSNHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLSMSRADTECRNNIFLLTMCKANCYLNGF
Ga0211736_1020626718	F005630	AGTAG	MINKSNKNKVMANLYEVEGFYGSRNRGTILVYETFSGKRWYCVEGSCNINCTYDEINEGCDVERISDIDTMSSRDGIYSARELCDFVIN
Ga0211736_1020626720	F007751	N/A	MNIITVIAPNTQSADLKSVIGKDVSQNQSPTCRARLVSVGKSNCIFESVPSPYDKFPKPEFVGVKYKVPNWIAWNSFFY
Ga0211736_1020626721	F018718	N/A	MKIREFYLENYPTDDLRLELNETPTFAGLLNQLIIGGDVYRYIGVGDSIIRERLFERLAEELEVSYDYVYNLWLK
Ga0211736_1020626724	F010084	N/A	MDITEEVIKHLKNNIKTKIGVSSIDGVGVFAIRDIKQYEEVFPIWNYDSGIYLIPNDRLGEIENEVVDLLDKYFINDECGYKVIRLFNGFNFLFHGFSYCNSAWPDKNKINITNNGIAMRDIKAGEEILEWYNENIN
Ga0211736_102062678	F030760	N/A	MVKQFTTKLPNMNYKTTHDIEIVSQSGDKITIKGLSYSTIMQIANSNPELKAITITKQYEKKISKY
Ga0211736_102062679	F010836	N/A	MATSNFHNVNASHIFACSLENEWDYEDLVDNLKSELSNDSDYVDYGKTDNNELRSFPSRTLGSIRKYHQYKDFYVEVCVTPVIRSGYYEGCNLDWNVDYLLNGDVSYDSPDFYIDDIAYCGNLTKSAATKYAKLAEKKAEKLRNEIVEKLEAIYNDYSMKLGVTAQFSNGETIYHKVA