NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10198849

Scaffold Ga0211736_10198849


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10198849 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1305
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F001019Metagenome / Metatranscriptome804Y
F001781Metagenome / Metatranscriptome635Y
F004666Metagenome / Metatranscriptome428Y
F023347Metagenome / Metatranscriptome210Y
F024786Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_101988491F023347N/ALMLMAESDLAEASEQEQRSEEAMDSMVRTECEGRLDALVAVYELTYQLSFAIGARDEA
Ga0211736_101988492F001781GGAGMKPEDKDKLNKCLEILDTTDLGLSMVWLWTWSTINNILDDETYKAKVTQDQMWEHLCEAVEAGHGFSLEYGAEQHQDDVLEWMMNRDYIVDTMFEDDEEEEEDATD
Ga0211736_101988493F000441AGGAGGMQQTDHYINTQLSKAQALLWSGSLHEVDEAHNIISKLIKDRMSEQEGTNE
Ga0211736_101988494F001019AGGAGGMSNYEPSLEILEVNYSCSPGGIDTFEVYDKGDNAGIMDIPIYETESLTEAVQYCYNLGKDFTVRTYAEWESRELASL
Ga0211736_101988495F024786GGAGLPVYRVFGTKYTNYYTIIEAADQFEAVDLANALPEIEWNSIPTDDVIEATDVYLNEDTSDELQLNI
Ga0211736_101988496F004666AGGAMTTKREYLASKGITVGRRGRFSSAANKALQDAAAQGVVFQAEKPQPKK
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