Scaffold Ga0211736_10170326

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10170326
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4588
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004978	Metagenome / Metatranscriptome	416	Y
F006112	Metagenome / Metatranscriptome	381	Y
F018539	Metagenome	234	Y
F043926	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1017032611	F043926	GGAG	MVKWECQMFYKDKLYSGHYWGDELSLARARRKVAELQRYHPAMRFVLTDWQKGSIIELHKRTKELA
Ga0211736_1017032612	F006112	GGAG	MKQDYTLYIYKADKRTKTGERLFSTTVWTGTDDNGMRRTVADMFDLYPPSKGWRFDWTPSMKRVRNLMSGVEIEIPHDTPRSCDPSSELYWSM
Ga0211736_101703262	F004978	AGG	MITADTLETLTTYSPQYLTRAAQLAGYKGPDFTGCRFIGITNGGQFCYTAVFQVKGGTDSTKIFLSYDHAEDKVIADYHLTEVF
Ga0211736_101703269	F018539	AGGA	MSTVYNANTAKAKVIYYKDKETYKIIFAFNVHKKVKDNGEIVHMFPTQAKCAYVSGDINYETLQADKERIIEQAKKTMRTNSVEFV