Scaffold Ga0211736_10145601

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10145601
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3525
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F003066	Metagenome / Metatranscriptome	509	Y
F011384	Metagenome / Metatranscriptome	291	Y
F011921	Metagenome / Metatranscriptome	285	Y
F019123	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1014560111	F002037	GGA	VVLAALAIWGTEKAIGQTTTILAPDGSVTICQVGSNGIVICV
Ga0211736_101456012	F011921	N/A	MAISFCLLGVYNMANGLEKIADILKRLNDELKLDNDKWERANVTTTVLRPGDDGTAPARITTTGETDD
Ga0211736_101456017	F003066	AGGA	MAKKEPVAWLYEEFDVRSGDLKASYLWSFHPKELSYLNDLKGSTHHIKITPLFRGEKIEEYKSMNKYSEETQRLIESNNGL
Ga0211736_101456018	F019123	N/A	MDSKPLTQEEIIKIYKEAFGYGSQVITIDKIFKFARLIEQLHGVKDVH
Ga0211736_101456019	F011384	GGAG	MYTKLDDQRQAKFIISYIEANPGCSIKSIVQQCVVCRTRLKYLESQGYFTLPKWTYNNTLDKRFKNRNYVSVTVGREYGKWQEQKRY