Scaffold Ga0211736

Basic Information
Taxon OID	3300020151 Open in IMG/M
Scaffold ID	Ga0211736_10079655 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020151 Open in IMG/M

Scaffold ID

Ga0211736_10079655 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19613
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (31.82%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

19613

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (31.82%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	4 to 10
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

4 to 10

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004206	Metagenome / Metatranscriptome	448	Y
F010533	Metagenome / Metatranscriptome	302	Y
F027822	Metagenome	193	N
F078616	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1007965519	F078616	N/A	MDKAVAAGWLTYPEQAEVKPRMMSRNWAQPAEAFDSGLAWRMWDNGASREQIARAAGCSRRGVQAVIEHGRTNK
Ga0211736_100796552	F010533	N/A	MRTVTYDYVLQRACELTGRVFSTLTTEESNFFRTFISMSLRSAWECFDWPEQTVYEQQYFAANYDPTQLYSAGMVVYFKTEQKYYQYVGSINSGNPPTTGGPNGTLNAQYWANAEPDYGNNDGNWDATTAYTIGQIVLYPDTQQHYQLYATAPVGTVPTNSVYWGVLNKFLRNISQTNNPDGTTRAVPIGETFSVWPGDPRVSWRQQEATYTFTDNGVLVGDQLPYVWLEFRKTPPLLSSSAEATAYAFPYRFSEICALKAAGQMLRVDGKIDLGNQFLELGEVELTKEIDKVALQEKYVRQIIVPSR
Ga0211736_100796555	F004206	N/A	MIPQITDYLLAKVPDSFKGWTREAVEDYVMFHAEQGTLKIACQDDHVVAVLVGWRQTGPEPKAWSWQPNDPNGDHWYWHQFAADCALFAMAVAAKFFHDRPESAILPAIGHRNGKLVTYKKGSMPIYKMAYKKHGIS
Ga0211736_100796559	F027822	N/A	MPAEIKDIGSIYAEATAGSESARQWLAAWHFYCHAIDDLVDGDVVLNTESMLDLLIQANSLYSMPFYIEHGIRLAPMVAQVTSTYADSVAWEKSDIEWKARIADVIRCCGNDMVLQVAWILGGYPRMRAISLSLREAAYHSQHS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211736_10079655

Overview

Ecosystem & Geography

Associated Families

Sequences