Scaffold Ga0211736_10045936

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10045936
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3008
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004476	Metagenome / Metatranscriptome	436	Y
F011760	Metagenome	287	Y
F024112	Metagenome	207	Y
F027516	Metagenome	194	Y
F057375	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_100459361	F024112	AGGA	MEIKDYDKDRATVLNALYCSVRSAIEAENVHNNTRIEWIEDDFKVAKQKLEAIEAEMRVLLGDP
Ga0211736_100459362	F057375	AGGA	MEQTVHFVNASDFFDAIELGGAESGEFLEQFTYGDALTDITLVAKTTFLQRLTKFIGECEDIYEKDVVMQSLKEFNFGLLGAIKHVNIEA
Ga0211736_100459363	F027516	GGAG	MTYQDYVIKCEVAKTVFQCGVTAALQVENATPEKRLAWIAEDLKKLETELEQIGKTFDEQDEVGDPFVDSVKEEVK
Ga0211736_100459364	F004476	N/A	MLYSKHGFKSVDTAESFIKEALELGNKDVVLSVVHDDGVIDIVFSPTMDAIEAEVFHFLNDGTELKFSMPLKSLANDTISSLHLTSAIYAYLSEAFKVADMFRRTTRQSTDYAK
Ga0211736_100459367	F011760	N/A	MENTTIQRMVMRVRIQDVSDRSSAIEYVGQGTWFDGKSFIVAQYKANPTNFYFFVYNDFVPAYNYFDAMDSGFGNEIHQLNPDNGYFSGKTYVYSTMLDKMYEPYAVSPVAESPTFLFDI