Scaffold Ga0211736_10035079

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10035079
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33855
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (19.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013763	Metagenome / Metatranscriptome	268	Y
F014141	Metagenome / Metatranscriptome	265	Y
F018176	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1003507922	F018176	N/A	MLNILAPILLALAPVEPTLVKVNVTNAQHIQTIGGRDVTFGVKENVEELLIEKGYTTVDSGVAFDVQVSIDSIYSPQQLLNIVGLQWLRKDYIVETTICIGSGCFKGKGERRTFIFAMFLNVENGEVPLNKKAFSKSLQEALIKTTKQF
Ga0211736_1003507925	F013763	N/A	MSEFQLKEGQGYIYVGEYFHKFGKEVPSEKKIGKTDDLLKIPQIDDYAFSLDFHTPDIYLVDDVEKMYKALTTILEHDQLKEDWFEDTDGDLKDRVAKFMAAFGYTEIADIDGDGIPDHLDDVIG
Ga0211736_1003507927	F014141	AGG	MKNREIITRRLEKAEGQIEKLHFYLQRGGTTEQVQESLVILREAIDDAKVFIQQEPLSPNEVNNY