Scaffold Ga0211736_10006925

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10006925
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23774
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (58.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F055547	Metagenome / Metatranscriptome	138	Y
F085375	Metagenome / Metatranscriptome	111	Y
F100423	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1000692516	F085375	N/A	MEPQGLPRLERNDSVQMINHINPNWDIKDFFNLNYELSTHKDVELVNQYLSSGHSKEKLSIYKYQLPNPMPKCVDEYIIPHFDFLDKVGSAVNYFKPGQYLPLHTDLFGKYVEINNIGSENVIRCMVMLEDNSPGQILQIKDTAYSTWKAGDCFYWDYDEIHAFYNFSMKDRYAIQITGVKNEKSE
Ga0211736_1000692528	F055547	AGTAGG	MIATNWFQRKWGLEDPILIDELYSRMVELEQRVKVLEEENVETTNELYRLENSLDARIDIIAERCRIEYDV
Ga0211736_1000692547	F100423	N/A	MTLPQQEHNSLIATREFLVDLMDSKKIPGVPEKVRLSARALLKHYPMRHKIDELYSGNTFSEYVPSNKSDITEEEWENNNRIYNNNQTWETPGFKWKTEVEFVPAES
Ga0211736_100069257	F000345	GGAG	MNEKQPSEFGKSLKEWWDSDSFKELQKANQESRERAVGKYFMLSEEDKIDMVQAICQIMCKAESEGCSHRGLQSALGIYPGGFWVDHLMDVHNALWSYYHDKKREQELKDDLDALEKFIK