Scaffold Ga0196977_1000400

Overview

Basic Information

• Taxon OID: 3300020146
• Scaffold ID: Ga0196977_1000400
• Source Dataset Name: Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_10-13C
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23117
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (54.55%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.305
  • Long. (^o): -116.2547
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001123	Metagenome / Metatranscriptome	770	Y
F001576	Metagenome / Metatranscriptome	669	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196977_100040012	F001576	AGGA	VKPIVYRDYARTATLLVLALLVSFTIVRSQQPATHPQDAKAPAKEVTAQEKKAPNKPGFVWTIKTRPILNLSLKAEKAKMSEVAQALSEKLKIPVFLGPERQKEVISIEFSELTLEPALQLMSPTVYVDYELDTGSMNPPKPLGIFFYDTNQGEPPLTAVVTGTNQSMLIEGNTEDGVEPTTDEEKQKLEEQPLRVRYENALLTVKAKQQPLPVVLLKIGEELGIPVDIQNERLDPIDANISKLPIEDVARQLSPHIKLYYRADLTRAEKRALRLVLAEPPKTTQGP
Ga0196977_100040013	F001123	AGGAGG	LAKQNDIINEENSGLKNANGAGELKDKKAFVEPAISVPVDVLEATTFFQVASSGGTN