Scaffold Ga0196977_1000223

Overview

Basic Information

• Taxon OID: 3300020146
• Scaffold ID: Ga0196977_1000223
• Source Dataset Name: Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_10-13C
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34224
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.305
  • Long. (^o): -116.2547
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004903	Metagenome / Metatranscriptome	419	Y
F006090	Metagenome	382	Y
F026702	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196977_100022315	F006090	AGGA	MLVGPDPALAKVKGVMFGGRKQFLMDTIGEEGFNALLEKLTPRTRGYVKTPLASSWCEFESLIELDRAIHNELKGKYPNVLALIGAASAELGIGRIYRSLDSESLVQFLENNAMFHDQYQKFGAVRFEKTANGARMIYSNYPCYSPLYCASAFGYFLESILRHGGSDPNVTESKCQCLGDKTCTFEMTWR
Ga0196977_100022317	F004903	AGGAG	MSRYLQKISLRPYSDAEIWTGWELENRSGEIEGLILADQLSDEELLAQYGVQEFQKIPGEYLEAGEFRPKP
Ga0196977_100022329	F026702	GAGG	MNFDRATISYPDGRIAHVTPAQFYEIPLGERIQLLTGGRLKFERANQPVSPLEALKKK