Scaffold Ga0211732_1576003

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1576003
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14197
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076091	Metagenome / Metatranscriptome	118	Y
F082694	Metagenome	113	Y
F085382	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_157600310	F085382	N/A	MSIYQTFLADFQGLLADVGVPASVNGNLFLVALSRPMNTPKFDAGGFVDQKMWTVRFAAATAPWTASDGRVGGQVATIVSGVPMASLAEGKKLTVNGQVLRVKGQAYKQASAVIELECIDDNQ
Ga0211732_157600312	F082694	AGG	MGYKSARHIVEAVLASYLDSQPELAGVTFYTGDSAETATLPKCVVLCDSARLPNDFPDGLGNYNCGVRVTVFDSADDTTLSQHRERCAAIAGAMQDLDLIKSGFVASGDALCYDITPTAEDEGVNERSWASVFSYDLLIVVNPQ
Ga0211732_15760035	F076091	GAGG	MPLGLFVGLDEDTLLAYKQQALADMGLAVTSYSDSGTSVNKQWGVPPQTRLLELNFALSKLDPKKYGGAHTSVQITWTDRVDL