Scaffold Ga0211732_1566246

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1566246
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2563
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F009005	Metagenome / Metatranscriptome	324	Y
F010683	Metagenome	300	Y
F018718	Metagenome / Metatranscriptome	233	Y
F027513	Metagenome / Metatranscriptome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_15662461	F000785	N/A	MRVTNKKGMKFDCTRLMKWAEEKLGKSKCTAIAFTWDPTEESCGWYNWDETIWINLASCKRMITVQKTLLHEWTHAQQTFRWYNHYNVKYGYKNNPYELEARENEKLVKRAYKRKGRTNA
Ga0211732_15662462	F027513	AGG	MRKNDNVKPGEQVASNRALHNDMHLVEGVDGEYNAVVFQVDRHTLIRGEYYPIGNNFHYPKIWGRKYAATKLIEDIMADKRKSIQEAELELIKLQSCLDRVNLWSDTDL
Ga0211732_15662463	F009005	N/A	MITESEIIQQARTIGMDEEILSYAKQIQRQLSSEGDEALWLDCLEMAYNELILNEL
Ga0211732_15662465	F018718	N/A	MNIKEFYLANYPSDDLGLELNETPTFAGLLNQLIVGGDVYRYIGVGDSIIRERLFERLAEELEVSYDYVYNLWLK
Ga0211732_15662467	F010683	N/A	MNKKVTKKSIKPAKKAASKKAVAMNIIKHKRVVLESVGTESLPDMVFVSAAPVWAKAIIGKRYVNLERAVSIIETLDAEKLISKGAKNLLKEMD