Scaffold Ga0211732_1547850

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1547850
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2231
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029757	Metagenome	187	N
F047683	Metagenome	149	N
F054874	Metagenome / Metatranscriptome	139	Y
F103267	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_15478503	F029757	AGGA	MLTLRDINAATNSRDGDIYSDLYKDVYGSRPRHAEFASIEEFDTDFEALSRLLDKEIESEAEYQQIYFDKFVARVEETMQIVQGATRERAIEIIAEAEGIRAAEFDFYGLEILEHELNLKFGSISKWLSE
Ga0211732_15478504	F047683	AGGA	MTLTIEQIESTYIVPADATRQNYYPVRAYWIPIELREQVLAAYRETNTRVRLRYRGPRSVAIGREMTRNDKTTYLRSRHRAMQDCLIADATHFTVYDYTGA
Ga0211732_15478506	F103267	GGAGG	MEVELFAFPTMENPKAVEDTFCDLLNAKRRGESLPVEALDWMDTANNWLLESK
Ga0211732_15478507	F054874	GGAG	MPSENKGGTFAPADMDLLKRALRYYKDMLVSTEESERNASAELMKVANLLHRIGRIA