Scaffold Ga0211732_1536763

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1536763
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2448
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000868	Metagenome / Metatranscriptome	853	Y
F021535	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_153676310	F000868	AGGCGG	MSSFLENENEMVIDMTYSEIGEQLVQDWINSNLDEGQLYADWCVAEMSSSNYLKGRFNQFYDLTPTDNYYLEYEEEQ
Ga0211732_153676311	F021535	N/A	EEETGWGGELEILRGVVISESEYDNMCRDCDATDQMEYCEEADCGEICGNCHWLGEADLEAVATCQTHKIYLDTKVPEYRKADVK
Ga0211732_15367632	F000441	AGGA	MRMSDNYLNDQLNKAQELLWGGSETENIEAHNIIAKLISDRIVQVKN
Ga0211732_15367634	F000263	AGG	MDMNMEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQELADAIEREEESEEAMDSMVRTECEGHLDALVLLYELTYQLSFAIGARDEA