Scaffold Ga0211732_1481089

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1481089
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2716
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007691	Metagenome / Metatranscriptome	346	Y
F021288	Metagenome / Metatranscriptome	219	Y
F022197	Metagenome / Metatranscriptome	215	Y
F080058	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_148108910	F080058	AGTAGG	MNEYTVELIHEPSGAHMNFVMFSDLKEDEVQLSKEIWADMSVVVLDYIEGEE
Ga0211732_14810892	F007691	AGGA	LNTIDDLINEIYESNYSHLEFEENMGGEACDCHIHTTLNTIAHYAGIEVG
Ga0211732_14810893	F021288	GAGG	MLGYTQRDLADMTYGVGSADLLINADEHPAIHNYLVKTEEFLQGLWAEGYFD
Ga0211732_14810895	F022197	AGGA	MTLETETMEDPKMYADYYSCDLAISITNIKAKNRHHAEAVMQTFIDEIGKIMVDELSWDDAQWDIEENVFCPEYGTWEVR