Scaffold Ga0211732_1442432

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1442432
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3542
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Chlorovirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039139	Metagenome	164	N
F060908	Metagenome / Metatranscriptome	132	Y
F093847	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_144243210	F039139	GGTGG	MSMFLNAFEFTSEDIVTILRAHDTDITIQQLAEIHDILDHDSIVRSALQYNDPDMQLKSALSKAEDLMIMDGLFITEPKRFHVDD
Ga0211732_144243211	F093847	AGAAG	MVFLLQSQKDSTLTINLRKTFARIVYFIEQTNNGKSKETILKELELSEEEFQFLLNTMLSISTLKDNEATISSIQIKEEIFIGGTYVTVHNKDLISL
Ga0211732_14424329	F060908	N/A	MTRKLDYTVSETVYIRSKSRIHIPKKYASYIGLKQGYVAHVTNLNGAYIITACPTPESKKFMVDKDGAVRFNVDKTNYKIMIADNTVVIV