Scaffold Ga0211732_1410272

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1410272
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2213
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006844	Metagenome / Metatranscriptome	363	Y
F007112	Metagenome	357	Y
F084233	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_14102723	F084233	AGGA	MTLNVEIYEMDYSCSPGGVNCWEVSIDEWCVSDFKTAGDAIQYVLDKYPYDELNLNVKSLNWYFKEFADEYAI
Ga0211732_14102726	F007112	GAG	MHTLHYIAVEANSKQQAFDKVVVSLLPNEDGYRLADWSDWHVVGGGRWSTNANKENNLMAGYNNDPTDVLGFSEDKEKFQEALSGVGKFKSQAMNRAIKEFKPDKFISDMVDYASEGGRSEYNGDTMMSAYTMKEAATMLMGGWTPDSGLYDLQEHIAEVTYLKERLDKPEQSALQYLVPVDFHF
Ga0211732_14102728	F006844	GGAG	LAKWEIEVIFEPTGDYMNFVYETDTEDEDIIFDEVANQLSVVPFLVEKNEEE