Scaffold Ga0211732_1394585

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1394585
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6433
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001460	Metagenome / Metatranscriptome	690	Y
F002935	Metagenome	519	Y
F013184	Metagenome / Metatranscriptome	273	Y
F036238	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_139458510	F013184	AGGA	MKKYPFVIKLEGAVMANSEKEAHEKINLHLNDLGDVDSERYDLSWPDVSWDMEYELC
Ga0211732_139458511	F001460	GGAG	MLGYTELDLDRMTNAVHDSKLFYLRTPSDLIDKQPLIKDLEDTVSFLQGLWAEGYFD
Ga0211732_139458514	F000263	AGGA	MNAEDIGLLPHLQRMVNAGVSGLDIMHGELKNLMLIAETNLSDALHGEGYEYREGVLNTLVELYNLTYDLSFAIGARDDY
Ga0211732_139458517	F000852	GGA	MTTKREYLKAQGITVGARGRFSGAAKVALQEAAQKGLTFTAETPSTKK
Ga0211732_13945853	F002935	AGGA	MRERTKGYEGKLVDGKKLAEIANGIYNLQYSSDFSACTVDDLLLIELEEKNVYGDPKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKSCMTNTVADIADYIRVFGDRLENNCNLWQAKMSAHPVTMGL
Ga0211732_13945854	F000311	AGG	MYFELTAPDRLSLEMAYWDAQIMGLDPQFMPPLTFNIGTGSIEKVSRIRDKYNLKESYWSEHEPTEIYNRR
Ga0211732_13945855	F001043	AGGAG	MSDYKEGFSDGYKFAREELMEKLSEIDIADIDSWMLSKLAEMIEGGDL
Ga0211732_13945857	F036238	GGCGG	MGDRANFGFRQSNGETIVLYGHWAGHEMLDHLASAVDKARPRWSDDGYATRIAVSQLVADEWRNETGWGLYVNAIMDNEHRIPLVDWQSRTFSLHEEAPWSESDSNKVRGMCDEPLFTMSLDAFINKYSKVSL