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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020141 Open in IMG/M |
| Scaffold ID | Ga0211732_1382730 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | SciLifeLab |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29918 |
| Total Scaffold Genes | 40 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (97.50%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erken, Sweden | |||||||
| Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 10 to 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000332 | Metagenome / Metatranscriptome | 1283 | Y |
| F002933 | Metagenome / Metatranscriptome | 519 | Y |
| F007518 | Metagenome | 349 | Y |
| F028744 | Metagenome | 190 | Y |
| F031377 | Metagenome | 182 | Y |
| F045551 | Metagenome | 152 | N |
| F073255 | Metagenome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211732_13827301 | F031377 | GGA | MITNANDFISVNRINQRLTPFNTGKVQIGLLYQPPPPEMTYSEEIIQAALLGTGSIHQPAPAWPVILGSALLAILLITLIG |
| Ga0211732_138273011 | F007518 | AGGAG | MTDWTSEEDEAFNAVEKHSNLGKQILRDIEGQPYYYDIFVSVSQRNAVLEEVAKEIEKMKAFGPDTIGSFTVHIRNMKK |
| Ga0211732_13827302 | F028744 | AGGA | MYEFLYECDELGLALKCFFEYEPAEVGSVEPMSGLKLEPDYPEVWTLVSVFLPNSSVDLSGVLHPDVIFRIEQDAPIYFEEMRNVV |
| Ga0211732_138273036 | F073255 | GGA | MYDQKTDTQTQEACAGYKGQANAVGNADGKHHPVSLRIGYGNQLYVGSVGKRGGQRRDIQDDFTRFFYSYRRHDWVPVWY |
| Ga0211732_138273037 | F002933 | GGA | MIPPLYKWYPMVQPGGEPTKTDALERRAERLTEDYKQALKMKKMDIKIEALEFELYVKKAQRNQLSLEIFTNRKLDIYV |
| Ga0211732_138273039 | F000332 | GGAG | MRWLILLLLLGLVGAVAKNGCHVREFYGIAYTVHDPTLRHREMMAWLDQNAGRCKSTEYLVIWNNLSEWAGTADSTWLRNKVVHGYKDALEREKK |
| Ga0211732_13827304 | F045551 | AGGAG | MTEQRELELLRPYVAACGEFVTKNAALEKQLKAIDRLLLDVLMGDIDPMQAMINRQKIKDEHEA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |