Scaffold Ga0211732_1378982

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1378982
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2983
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010688	Metagenome / Metatranscriptome	300	Y
F014610	Metagenome / Metatranscriptome	261	N
F061810	Metagenome / Metatranscriptome	131	N
F066500	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_13789821	F066500	N/A	EYKRTVELLQRIPILTTLPNGLAHAVELMKLQDTAGRSQSLESENKALKEQLNKLQQKTAIGKSVPAGQLKTEEKDFSRLSMKEQREALMRATREFDRESNQ
Ga0211732_13789823	F010688	N/A	MVIAVSPKGHHRAIGGAPSHSACGCEEADNNAPMIAIPVEALSTDTEDGQQASPEVGDEVVLQEVRGVLKKLENGEAYVEIKSVNGMPAEYEEKSMDKEGPMDEEGMRNMVAEYDSEMES
Ga0211732_13789824	F014610	GGAG	MPIYTFENKGKSVEQIAPMGTDSLVIKGERWTRQPVARFGVTGCAREAELKDKVKQGFSRMEDRQGTRFESTFSKNQIRKIWDI
Ga0211732_13789826	F061810	N/A	VTLALGTRLTSTGGGSVIPVDPPIMRRDLLQEDEFFVLQEDGTGKIVLSFGTYDRMATEQGTDLILTEASDKFILTVY