Scaffold Ga0211732_1367865

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1367865
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3726
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024319	Metagenome / Metatranscriptome	206	Y
F038479	Metagenome / Metatranscriptome	166	Y
F056558	Metagenome / Metatranscriptome	137	Y
F084234	Metagenome / Metatranscriptome	112	Y
F095473	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_136786510	F084234	AGGAG	MFDFISAPFEWFANVVQYSLIFMAIMMLVLTIGAVVAIPLGLKLLGVAFAKTIVVETSKVVRDLGITNIDFKQKKDTEKMKAYLDRKVVPILTKSG
Ga0211732_136786511	F056558	N/A	MGILDNFENAWDDSFLFESKAIPATDSMGREIFWEDIGRPDPENLSVKIFSETVCKECTC
Ga0211732_13678656	F024319	AGG	MTNRIWESRNDYQNESDAKRLGYVSCSAGCGRVTAWSLCTMCGGNYAEHNLLGKVNK
Ga0211732_13678657	F038479	AGGTGG	MTTLTLEQKINKAAHLVAEGKVVSFRGASADTYKKVIALANRIKQDAEFPQCPCEECI
Ga0211732_13678659	F095473	GAG	MNTCQVINCESTELVYSGTDAFMLGINTETYCYKCANAYAQIDRAMTKVREEYLASTLTTSD