Scaffold Ga0211732_1359445

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1359445
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1708
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F005146	Metagenome / Metatranscriptome	410	Y
F042880	Metagenome	157	Y
F051794	Metagenome	143	N
F052570	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_13594451	F042880	N/A	TTIGELIEHLKGEDLEAPIIYQYYLAEHFEISEEVFAEVARDFDSLIPCFDSYEVISKEINSKREEANV
Ga0211732_13594454	F052570	AGGAGG	MRKMKYKLPKGVELEIDDYDAERKDRQDSAFYTWGDSHRVATLTYKEREYYVECVGEMRIIYKGDVLRYCDRLIKAGIKNDKDLAKIEESGGEWINNSWFEVYDESSGEYTGEVYHEVKDAIETVANWIIAEREEANV
Ga0211732_13594456	F002827	AGGAGG	MNKEYYQAKADLCRDLFIKQVGEGDSKEAGANLIRMVNALNQINLINYKEEKGNEAD
Ga0211732_13594457	F005146	AGGAGG	MKLINFYEVADRKGDTAWGGASESEAVEWFRRGLDNSIYVSVWNEEDIEEPKLVIDKIDITKLVLTTIVSERGRG
Ga0211732_13594458	F051794	GGAGG	MKTIDKRKEKAERRAVWLRNYQRARGRALTKLAQQYPDQYKDILEQERLSDEANGKTWLDITGATDNSAGVLTNTDGYNNTLRSEQAD