Scaffold Ga0211732_1350830

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1350830
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10028
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F003601	Metagenome / Metatranscriptome	477	Y
F055681	Metagenome / Metatranscriptome	138	N
F077223	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_135083010	F077223	N/A	MSFLVAFKHLIPNFHAYSDDERRYNIGATWTAADGLQDYHNLEMRYVRNSEQLALQGQPQPDGSWKYVEPNGCVHTMTAERAQAFMQQTHEHANIMCTMLDRLREAGLMDNIVDTEAQTA
Ga0211732_13508303	F001165	N/A	MPLIPPFNDAPKPRIPDAIDKQRLQAMQLVAKMKESADKYGVGFVGGFISPNGEKFMMTNMNSNDTNALLPDDLK
Ga0211732_13508306	F055681	N/A	MIGFSLEFKRWYVVIRGPKGTVYSAFGFAKQMPVFTPAKTMTLQEYIDDYNEAIVFTNEEGEELMRI
Ga0211732_13508308	F003601	AGGA	MTEHTDEQLLAMAMANLGEYMHDHSPHYVLIEEDPRNDEDYDTWEVGMEPLPYDHTWRSTSLDVDVSPINPS