Scaffold Ga0211732_1349060

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1349060
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1338
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001754	Metagenome / Metatranscriptome	641	Y
F003291	Metagenome / Metatranscriptome	495	Y
F007113	Metagenome / Metatranscriptome	357	Y
F093862	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_13490602	F007113	N/A	MKSKLNWELTPEQLKTVEIALCELFNSDRWISGREESEIDKIAERAGYLLNIIEQHNKKK
Ga0211732_13490603	F093862	N/A	MSNIITVPFESEIQIKAITKLLSAEYGCQVRPRGRHSDRKKVLGYKWRKWSQNDIPWRMAETVSFYIVNKTK
Ga0211732_13490604	F003291	N/A	MNKNTESLVSVFNQDELAEIMTALAGYVNIKRKQGRSTGITTQAFNKITDALLVSNYMNAVEIKPNANAPMGSAEYKAYEAMYDSDVRAHS
Ga0211732_13490606	F001754	N/A	RKNTLSLLYKGRESERVHHPNLKIKNYNMSTIANPFKNFSASKMSNNPRFEVVVSFTDFMGKSHNIVCKTRKKLAEANQFLKMFKSESVKINSILREYPVSMGKFPKKFHNEIKSDLQSAGFATISKYLLK