Scaffold Ga0211732_1337199

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1337199
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7990
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (40.91%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F004583	Metagenome / Metatranscriptome	432	Y
F006220	Metagenome	378	Y
F007310	Metagenome	353	Y
F008552	Metagenome	331	Y
F013084	Metagenome	274	Y
F013087	Metagenome	274	Y
F018927	Metagenome	232	Y
F043399	Metagenome	156	N
F095475	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_133719912	F001561	GGAG	MQTRDKKLEYLRKTIETLWHGVSDTKEGEYPRIISLYKEVLMYDYHDADSWENMIWLMWSMAVNKKDTVWLFQAEKFAKRYLSLNPNGYRAYEYVGQFYRIMYIDEKLAIRYYESAIRWKDAPESTHHSLISLCSKLNDKRMAIGYCKMTLAKFPNDVWTKSKLKSL
Ga0211732_133719913	F013087	N/A	MDSTTWIFFSKTGTGYELKGSDVVSGFDAFINSDRTYMIEYAYSDIKESMHFFIYEWDKSQKKRRTIFEGLQRETVLLSFVKNLNVTHNMRQDVFKQYYKTDEELELEKNANS
Ga0211732_133719914	F008552	N/A	MIISFEASANVDTTLFGYFSMEYDPELFSDIKENLTEISKNEPLSFKLNTDNVKLLQGAFHNIRRIISIPDIEQNKFTDVLKREFDTSTFKKFKQCKLHIDKDYFYFTGHYETGNNPIEFQSLNFDTRFIESLEYKYKKCQESVVN
Ga0211732_13371992	F095475	GGAG	MKNKYGKQCCYCGCYVNAGEGRCWRWDETNRWYVACEDCFQEKKEERKNQG
Ga0211732_13371993	F004583	AGGAG	MRTTRNSDRLREILVSTRQQIVSLKDIQMDILRHDGKVANQVATQISALEEVYKHQLSLVKLAENIEPKRDGWFTGHFKTKEDRLANIMD
Ga0211732_13371995	F006220	AGTAG	MKKFKKFIEELAIATGTEMMRASQMRPTSFKDKSKYSRKTKHKKVENND
Ga0211732_13371996	F007310	N/A	MRTVLWVTNDNERWFNHHHYECLIEDITGFNLQKDLCTESVKYMAKRLKDTPYHRAFRSKYSIYQDEYKTLVEKFNSQADNNGRLVVE
Ga0211732_13371997	F013084	N/A	MGIMNVIGLMAEAKETAIYRGHNVKNWDVLGGDCYSLECKDCKMTVMVKEYPLPNEINVGGEAIALTCVKPEKKKRDKKP
Ga0211732_13371998	F018927	N/A	MDKHITITRHLEVAGTTTYYVIEKSKNSSSIIWNGTNKQAAYQVAYRNARKLTLPLYDTLYRPEIDKNGVKHIIPVGNELLEVTN
Ga0211732_13371999	F043399	N/A	MLLDDYPIVIWTIVKKNNNYILLDSCGIEVFRRKENRKKEIYQYCEDNGIDIQEEF